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The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil

Yıl 2021, Cilt: 4 Sayı: 2, 154 - 162, 27.12.2021

Öz

Soil salinity and sodicity is a negative stress widely observed for agricultural production in the world. In saline and sodic soils, inter particulate distances increases by enhancing the repulsive forces because of high Na+ ion concentration. As a results, this undesirable situation results in dispersion of the soil, loss of porosity, reduction of water permeability in the soil profile. Besides, the crop production of this soil is very poor because of high pH, exchangeable Na+, deficiency of plant nutrients, high concentration of carbonates and bicarbonates. Considering the big need for the arable lands in the world, the remediation of these soil with effective methods will be the right approach. In this study, it was aimed to isolate and identify the bacteria with carbonate dissolution ability, which had potential to remediate calcerous soils from Dereli/Giresun/Turkey. According to the results, two isolates (Bacillus sp. and Chromohalobacter sp.) were determined that they were capable of CaCO3 dissolution. Only one isolate (Halomonas sp.) exhibited potential of both CaCO3 and MgCO3 dissolution.

Kaynakça

  • Abdel-Fattah, M.K., (2012). Role of gypsum and compost in reclaiming saline-sodic soils. Journal of Agricultural and Veterinary Science, 1(3), 2319-2380. doi.org/10.9790/2380-0133038.
  • Ahmad, S., Ghafoor, A., Qadir, M., & Aziz, M.A. (2006). Amelioration of a calcareous saline-sodic soil by gypsum application and different crop rotations. International Journal of Agriculture and Biology, 8530(2), 8142-146.
  • Courty, M.A., Marlin, C., Dever, L., Tremblay, P., &Vachier, P., (1994). The properties, genesis, and environmental significance of calcitic pendants from the High Arctic (Spitsbergen). Geoderma, 61(1-2), 71–102. doi.org/10.1016/0016-7061(94)90012-4.
  • Efe, D., Orhan, F., Gulluce, M., & Sahin, F., (2020) An Alternative Biotechnological Tool for Magnesite Enrichment: Lactic Acid Bacteria Isolated from Soil. Geomicrobiology Journal, 37(5), 446-453. doi.org/10.1080/01490451.2020.1719560.
  • Farrag, H.M., & Abeer A.A.B., (2021).Biological reclamation of a calcareous sandy soil with improving wheat growth using farmyard manure, acid producing bacteria and yeast. SVU-International Journal of Agricultural Science, 3(1), 53-71. doi.org/10.21608/svuijas.2021.57919.1070.
  • Friis, A., Davis, T., Figueira, M., Paquette, J., & Mucci, A., (2003). Influence of Bacillus subtilis cell walls and EDTA on calcite dissolution rates and crystal surface features. Environmental Science and Technology, 37(11, 2376–2382. doi.org/10.1021/es026171g.
  • Goswami, D., P. Dhandhukia, P. P., & Thakker, J. N. (2014). Screening of PGPR from saline desert of Kutch: growth promotion in Arachis hypogea by Bacillus licheniformis A2. Microbiological Research, 169(1), 66-75. doi.org/10.1016/j.micres.2013.07.004.
  • Gulluce, M., Bal, T., Ozkan, H., Adiguzel, A., Sahin, F., & Yanmis, D., (2014). Conventional and Molecular Identification of Bacteria with Magnesite Enrichment Potential from Local Quarries in Erzurum. Geomicrobiology Journal, 31(5), 445-451. doi.org/10.1080/01490451.2013.791357.
  • Hasanuzzaman, M., Nahar, K., Alam, M.M., Bhowmik, P.C., Hossain, M.A., Rahman, M.M., Prasad, M.N.V., Ozturk, M., &Fujita, M., (2014). Potential use of halophytes to remediate saline soils. BioMed Research International, 2014, 1-12. doi.org/10.1155/2014/589341.
  • Murtaza, G., Ghafoor, A., Owens, G., Qadir, M., & Kahlon, U.Z., (2009). Environmental and economic benefits of saline-sodic soil reclamation using low-quality water and soil amendments in conjunction with a Rice-Wheat cropping system. Journal of Agronomy and Crop Science, 195(2), 124-136. doi.org/10.1111/j.1439-037X.2008.00350.x.
  • Orhan, F., Demirci, A., & Yanmis, D. (2017). CaCO3 and MgCO3 dissolving halophilic bacteria. Geomicrobiology Journal, 34(9), 804-810. doi.org/10.1080/01490451.2016.1273410.
  • Qadir, M., & Schubert, S. (2002). Degradation processes and nutrient constraints in sodic soils. Land Degradation and Development, 13(2002, 275–93. doi.org/10.1002/ldr.504.
  • Qadir, M., Oster, J.D., Schubert, S., Noble, A.D., & Sahrawat, K.L., (2007). Phytoremediation of sodic and saline-sodic soils. Advances in Agronomy, 96, 197–247. doi.org/10.1016/S0065-2113(07)96006-X.
  • Shabala, S., & Cuin, T. A. (2008). Potassium transport and plant salt tolerance. Physiologia plantarum, 133(4), 651-669. doi.org/10.1111/j.1399-3054.2007. 01008.x.
  • Sklenicka, P., & Salek, M. (2008). Ownership and soil quality as sources of agricultural land fragmentation in highly fragmented ownership patterns. Landscape ecology, 23(3), 299-311. doi.org/10.1007/s10980-007-9185-4.
  • Suarez, D.L., (2001). Sodic soil reclamation: Modelling and field study. Australian Journal of Soil Research, 39(6), 1225-1246. doi.org/10.1071/SR00094.
  • Tamilselvi, S. M., Chitdeshwari T., & Sivakumar U. (2018). Calcite dissolution by Bacillus subtilis SSRCI02: An in vitro study for the reclamation of calcareous saline-sodic soils. Indian Journal of Geo Marine Sciences, 47(06), 1267-1273.
  • Tamilselvi, S.M., Thiyagarajan, C., & Uthandi, S., (2016). Calcite Dissolution by Brevibacterium sp. SOTI06: A Futuristic Approach for the Reclamation of Calcareous Sodic Soils. Frontier in Plant Science, 7(1828), 1-10. doi.org/10.3389/fpls.2016.01828.
  • Toth, G., Hermann, T., Da Silva, M.R., & Montanarella, L., (2018). Monitoring soil for sustainable development and land degradation neutrality. Environmental Monitoring and Assessment, 190(57), 1-4. doi.org/10.1007/s10661-017-6415-3.
  • Tribble, J.S., Arvidson, R.S., Lane, M., & Mackenzie, F.T. (1995). Crystal chemistry, and thermodynamic and kinetic properties of calcite, dolomite, apatite, and biogenic silica: applications to petrologic problems. Sedimentary Geology, 95(1), 11–37. doi.org/10.1016/0037-0738(94)00094-B.
  • Warren, J., (2000). Dolomite: occurrence, evolution and economically important associations. Earth- Science Reviews, 52(1-3), 1–81. doi.org/10.1016/S0012-8252(00)00022-2.
  • Whipkey, C.E., Capo, R.C., Hsieh, J.C.C., & Chadwick, O.A., (2002). Development of Magnesian Carbonates in Quaternary Soils on the Island of Hawaii. Journal of Sedimentary Research 72, 158–165.
  • Yanmis, D., Orhan, F., Gulluce, M., & Sahin, F., (2015). Biotechnological magnesite enrichment using a carbonate dissolving microorganism, Lactococcus sp. International Journal of Mineral Processing, 144, 21–25. doi.org/10.1016/j.minpro.2015.09.014.

Kireçli Toprağı Islah Etme Potansiyeline Sahip Bakterilerin İzolasyonu ve Tanılanması

Yıl 2021, Cilt: 4 Sayı: 2, 154 - 162, 27.12.2021

Öz

Toprak tuzluluğu ve sodikliği dünyada tarımasal üretim için yaygın gözlemlenen negatif bir strestir. Tuzlu ve sodik topraklarda, yüksek Na+ iyon konsantrasyonu nedeniyle itici güçlerin etkisiyle partiküllerin arasındaki mesafe artar. Sonuç olarak, istenmeyen bu durum toprağın dağılmasına, gözeneklerin kaybolmasına, toprak profilinde su geçirgenliğinin azalmasına neden olur. Ayrıca, topraktaki tarımsal üretim yüksek pH, değişebilir Na+, besin elementlerindeki eksiklik, karbonat ve bikarbonatın yüksek konsantrasyonu nedeniyle çok düşüktür. Dünyada ekilebilir arazilere olan büyük ihtiyaç göz önüne alındığında, bu toprakların etkin yöntemlerle ıslahı doğru bir yaklaşım olacaktır. Bu çalışmada, Dereli/Giresun/Türkiye’den kireçli toprakları ıslah etme potansiyeline sahip olan ve karbonat çözme potansiyeline sahip bakterilerin izolasyonu ve tanılanması amaçlanmıştır. Sonuçlara göre iki izolatın (Bacillus sp. and Chromohalobacter sp.) CaCO3 çözme yeteneğinde olduğu belirlenmiştir. Sadece bir izolat (Halomonas sp.) hem CaCO3 hem MgCO3 çözme potansiyeli göstermiştir.

Kaynakça

  • Abdel-Fattah, M.K., (2012). Role of gypsum and compost in reclaiming saline-sodic soils. Journal of Agricultural and Veterinary Science, 1(3), 2319-2380. doi.org/10.9790/2380-0133038.
  • Ahmad, S., Ghafoor, A., Qadir, M., & Aziz, M.A. (2006). Amelioration of a calcareous saline-sodic soil by gypsum application and different crop rotations. International Journal of Agriculture and Biology, 8530(2), 8142-146.
  • Courty, M.A., Marlin, C., Dever, L., Tremblay, P., &Vachier, P., (1994). The properties, genesis, and environmental significance of calcitic pendants from the High Arctic (Spitsbergen). Geoderma, 61(1-2), 71–102. doi.org/10.1016/0016-7061(94)90012-4.
  • Efe, D., Orhan, F., Gulluce, M., & Sahin, F., (2020) An Alternative Biotechnological Tool for Magnesite Enrichment: Lactic Acid Bacteria Isolated from Soil. Geomicrobiology Journal, 37(5), 446-453. doi.org/10.1080/01490451.2020.1719560.
  • Farrag, H.M., & Abeer A.A.B., (2021).Biological reclamation of a calcareous sandy soil with improving wheat growth using farmyard manure, acid producing bacteria and yeast. SVU-International Journal of Agricultural Science, 3(1), 53-71. doi.org/10.21608/svuijas.2021.57919.1070.
  • Friis, A., Davis, T., Figueira, M., Paquette, J., & Mucci, A., (2003). Influence of Bacillus subtilis cell walls and EDTA on calcite dissolution rates and crystal surface features. Environmental Science and Technology, 37(11, 2376–2382. doi.org/10.1021/es026171g.
  • Goswami, D., P. Dhandhukia, P. P., & Thakker, J. N. (2014). Screening of PGPR from saline desert of Kutch: growth promotion in Arachis hypogea by Bacillus licheniformis A2. Microbiological Research, 169(1), 66-75. doi.org/10.1016/j.micres.2013.07.004.
  • Gulluce, M., Bal, T., Ozkan, H., Adiguzel, A., Sahin, F., & Yanmis, D., (2014). Conventional and Molecular Identification of Bacteria with Magnesite Enrichment Potential from Local Quarries in Erzurum. Geomicrobiology Journal, 31(5), 445-451. doi.org/10.1080/01490451.2013.791357.
  • Hasanuzzaman, M., Nahar, K., Alam, M.M., Bhowmik, P.C., Hossain, M.A., Rahman, M.M., Prasad, M.N.V., Ozturk, M., &Fujita, M., (2014). Potential use of halophytes to remediate saline soils. BioMed Research International, 2014, 1-12. doi.org/10.1155/2014/589341.
  • Murtaza, G., Ghafoor, A., Owens, G., Qadir, M., & Kahlon, U.Z., (2009). Environmental and economic benefits of saline-sodic soil reclamation using low-quality water and soil amendments in conjunction with a Rice-Wheat cropping system. Journal of Agronomy and Crop Science, 195(2), 124-136. doi.org/10.1111/j.1439-037X.2008.00350.x.
  • Orhan, F., Demirci, A., & Yanmis, D. (2017). CaCO3 and MgCO3 dissolving halophilic bacteria. Geomicrobiology Journal, 34(9), 804-810. doi.org/10.1080/01490451.2016.1273410.
  • Qadir, M., & Schubert, S. (2002). Degradation processes and nutrient constraints in sodic soils. Land Degradation and Development, 13(2002, 275–93. doi.org/10.1002/ldr.504.
  • Qadir, M., Oster, J.D., Schubert, S., Noble, A.D., & Sahrawat, K.L., (2007). Phytoremediation of sodic and saline-sodic soils. Advances in Agronomy, 96, 197–247. doi.org/10.1016/S0065-2113(07)96006-X.
  • Shabala, S., & Cuin, T. A. (2008). Potassium transport and plant salt tolerance. Physiologia plantarum, 133(4), 651-669. doi.org/10.1111/j.1399-3054.2007. 01008.x.
  • Sklenicka, P., & Salek, M. (2008). Ownership and soil quality as sources of agricultural land fragmentation in highly fragmented ownership patterns. Landscape ecology, 23(3), 299-311. doi.org/10.1007/s10980-007-9185-4.
  • Suarez, D.L., (2001). Sodic soil reclamation: Modelling and field study. Australian Journal of Soil Research, 39(6), 1225-1246. doi.org/10.1071/SR00094.
  • Tamilselvi, S. M., Chitdeshwari T., & Sivakumar U. (2018). Calcite dissolution by Bacillus subtilis SSRCI02: An in vitro study for the reclamation of calcareous saline-sodic soils. Indian Journal of Geo Marine Sciences, 47(06), 1267-1273.
  • Tamilselvi, S.M., Thiyagarajan, C., & Uthandi, S., (2016). Calcite Dissolution by Brevibacterium sp. SOTI06: A Futuristic Approach for the Reclamation of Calcareous Sodic Soils. Frontier in Plant Science, 7(1828), 1-10. doi.org/10.3389/fpls.2016.01828.
  • Toth, G., Hermann, T., Da Silva, M.R., & Montanarella, L., (2018). Monitoring soil for sustainable development and land degradation neutrality. Environmental Monitoring and Assessment, 190(57), 1-4. doi.org/10.1007/s10661-017-6415-3.
  • Tribble, J.S., Arvidson, R.S., Lane, M., & Mackenzie, F.T. (1995). Crystal chemistry, and thermodynamic and kinetic properties of calcite, dolomite, apatite, and biogenic silica: applications to petrologic problems. Sedimentary Geology, 95(1), 11–37. doi.org/10.1016/0037-0738(94)00094-B.
  • Warren, J., (2000). Dolomite: occurrence, evolution and economically important associations. Earth- Science Reviews, 52(1-3), 1–81. doi.org/10.1016/S0012-8252(00)00022-2.
  • Whipkey, C.E., Capo, R.C., Hsieh, J.C.C., & Chadwick, O.A., (2002). Development of Magnesian Carbonates in Quaternary Soils on the Island of Hawaii. Journal of Sedimentary Research 72, 158–165.
  • Yanmis, D., Orhan, F., Gulluce, M., & Sahin, F., (2015). Biotechnological magnesite enrichment using a carbonate dissolving microorganism, Lactococcus sp. International Journal of Mineral Processing, 144, 21–25. doi.org/10.1016/j.minpro.2015.09.014.
Toplam 23 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Bölüm Araştırma Makaleleri
Yazarlar

Züleyha Akpınar 0000-0003-0102-6651

Derya Efe 0000-0003-4230-6780

Yayımlanma Tarihi 27 Aralık 2021
Yayımlandığı Sayı Yıl 2021 Cilt: 4 Sayı: 2

Kaynak Göster

APA Akpınar, Z., & Efe, D. (2021). The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil. Journal of Apitherapy and Nature, 4(2), 154-162.
AMA Akpınar Z, Efe D. The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil. J.Apit.Nat. Aralık 2021;4(2):154-162.
Chicago Akpınar, Züleyha, ve Derya Efe. “The Isolation and Identification of Bacteria With the Remediation Potential of Calcerous Soil”. Journal of Apitherapy and Nature 4, sy. 2 (Aralık 2021): 154-62.
EndNote Akpınar Z, Efe D (01 Aralık 2021) The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil. Journal of Apitherapy and Nature 4 2 154–162.
IEEE Z. Akpınar ve D. Efe, “The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil”, J.Apit.Nat., c. 4, sy. 2, ss. 154–162, 2021.
ISNAD Akpınar, Züleyha - Efe, Derya. “The Isolation and Identification of Bacteria With the Remediation Potential of Calcerous Soil”. Journal of Apitherapy and Nature 4/2 (Aralık 2021), 154-162.
JAMA Akpınar Z, Efe D. The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil. J.Apit.Nat. 2021;4:154–162.
MLA Akpınar, Züleyha ve Derya Efe. “The Isolation and Identification of Bacteria With the Remediation Potential of Calcerous Soil”. Journal of Apitherapy and Nature, c. 4, sy. 2, 2021, ss. 154-62.
Vancouver Akpınar Z, Efe D. The Isolation and Identification of Bacteria with the Remediation Potential of Calcerous Soil. J.Apit.Nat. 2021;4(2):154-62.
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